If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ), 'gf_id' => 'HOM05D000879', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000879' ), 'data_identifier' => 'HOM05D000879', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000879', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p31520' => 'bna', 'A02p37340' => 'bna', 'A02p37770' => 'bna', 'A03p18590' => 'bna', 'A04p25450' => 'bna', 'A05p12490' => 'bna', 'A06p39300' => 'bna', 'A08p36730' => 'bna', 'A09p04350' => 'bna', 'A09p23190' => 'bna', 'Aa31LG10G1110' => 'aar', 'Aa31LG10G4100' => 'aar', 'Aa31LG5G4050' => 'aar', 'Aa31sc656G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1326' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2260' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.694' => 'aag', 'Actinidia01449' => 'ach', 'Actinidia07858' => 'ach', 'Actinidia08380' => 'ach', 'Actinidia09798' => 'ach', 'Actinidia30092' => 'ach', 'Actinidia39953' => 'ach', 'Ah.01g013970' => 'amhyb', 'Ah.06g181540' => 'amhyb', 'Ah.08g214050' => 'amhyb', 'Ah.15g094200' => 'amhyb', 'AL1G14430' => 'aly', 'AL4G28710' => 'aly', 'AL8G10230' => 'aly', 'AL8G20920' => 'aly', 'AL8G22050' => 'aly', 'Aqoxy1G04268' => 'aox', 'Aqoxy2G02332' => 'aox', 'Aqoxy2G03789' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1SA3EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2J48HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UY518' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SQ8M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VGG9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.73J6R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74EXT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A3KH0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9LP27W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TNK9X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6L8Z0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6NU9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE1039' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ER7ZFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ESB5J4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD1PW0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX5VS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYZ4Q6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH7Y72' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K55J2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKNM96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LH4NZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDL7Z2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDS0X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QTKE08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T6TKQJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4EMGT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y73J7P' => 'arhy', 'AT1G04710' => 'ath', 'AT2G33150' => 'ath', 'AT5G47720' => 'ath', 'AT5G48230' => 'ath', 'AT5G48880' => 'ath', 'ATR0751G151' => 'atr', 'ATR0787G145' => 'atr', 'Atru.chr1.2202' => 'acertr', 'Atru.chr4.1777' => 'acertr', 'Atru.chr5.1871' => 'acertr', 'Atru.chr6.3405' => 'acertr', 'AUR62001293' => 'cqu', 'AUR62008879' => 'cqu', 'AUR62014998' => 'cqu', 'AUR62016401' => 'cqu', 'AUR62017117' => 'cqu', 'AUR62025678' => 'cqu', 'AUR62029123' => 'cqu', 'AUR62031829' => 'cqu', 'AUR62032395' => 'cqu', 'AUR62032397' => 'cqu', 'AUR62036470' => 'cqu', 'AUR62039576' => 'cqu', 'AUR62042268' => 'cqu', 'AUR62042919' => 'cqu', 'BcaB01g03932' => 'bca', 'BcaB02g10527' => 'bca', 'BcaB03g13474' => 'bca', 'BcaB04g19565' => 'bca', 'BcaB06g28654' => 'bca', 'BcaB07g30047' => 'bca', 'BcaB07g30763' => 'bca', 'BcaC01g05858' => 'bca', 'BcaC02g07859' => 'bca', 'BcaC02g11389' => 'bca', 'BcaC03g17641' => 'bca', 'BcaC03g17680' => 'bca', 'BcaC04g21606' => 'bca', 'BcaC04g23786' => 'bca', 'BcaC06g30817' => 'bca', 'BcaC07g36886' => 'bca', 'BcaC07g42095' => 'bca', 'BolC2t11699H' => 'bol', 'BolC2t11756H' => 'bol', 'BolC3t14552H' => 'bol', 'BolC4t27741H' => 'bol', 'BolC6t39403H' => 'bol', 'BolC7t44417H' => 'bol', 'BolC8t46951H' => 'bol', 'BolC9t53394H' => 'bol', 'BolC9t55856H' => 'bol', 'BraA02t08155Z' => 'bra', 'BraA02t08720Z' => 'bra', 'BraA02t08760Z' => 'bra', 'BraA03t11118Z' => 'bra', 'BraA04t18048Z' => 'bra', 'BraA05t20187Z' => 'bra', 'BraA06t26846Z' => 'bra', 'BraA08t35575Z' => 'bra', 'BraA09t36072Z' => 'bra', 'BraA09t37922Z' => 'bra', 'C02p25340' => 'bna', 'C02p56400' => 'bna', 'C02p56870' => 'bna', 'C03p21690' => 'bna', 'C04p16110' => 'bna', 'C04p62590' => 'bna', 'C07p13790' => 'bna', 'C07p38960' => 'bna', 'C08p01420' => 'bna', 'C09p04660' => 'bna', 'C09p29930' => 'bna', 'CAN.G119.4' => 'can', 'CAN.G1263.5' => 'can', 'CAN.G1377.1' => 'can', 'CAN.G437.17' => 'can', 'CAN.G481.43' => 'can', 'CAN.G500.85' => 'can', 'CAN.G932.2' => 'can', 'CANSAT56G2516' => 'cansat', 'CANSAT64G1123' => 'cansat', 'CANSAT78G1660' => 'cansat', 'CARHR004100' => 'chi', 'CARHR127130' => 'chi', 'CARHR173600' => 'chi', 'CARHR182840' => 'chi', 'CARHR184060' => 'chi', 'Carub.0001s0397' => 'cru', 'Carub.0004s1458' => 'cru', 'Carub.0008s0006' => 'cru', 'Carub.0008s0780' => 'cru', 'Carub.0008s0860' => 'cru', 'Ca_06480_v3' => 'car', 'Ca_11849_v3' => 'car', 'Ca_20022_v3' => 'car', 'Ca_20148_v3' => 'car', 'Ca_20990_v3' => 'car', 'CBR_g23516' => 'cbr', 'CBR_g23517' => 'cbr', 'CBR_g41061' => 'cbr', 'Cc01_g17280' => 'ccan', 'Cc03_g07290' => 'ccan', 'Cc05_g01610' => 'ccan', 'Cc09_g00280' => 'ccan', 'CDE02G0186' => 'cde', 'CDE02G3686' => 'cde', 'CDE04G3356' => 'cde', 'CDE04G3682' => 'cde', 'CDE06G1393' => 'cde', 'CDE07G2041' => 'cde', 'Cfa000031' => 'cfa', 'Cfa002547' => 'cfa', 'Cfa014901' => 'cfa', 'Cfa021032' => 'cfa', 'Cfa022545' => 'cfa', 'Cfa022573' => 'cfa', 'Cfa024611' => 'cfa', 'Cfa026673' => 'cfa', 'Cfa026948' => 'cfa', 'Cfa026997' => 'cfa', 'Ciclev10004931m.g' => 'ccl', 'Ciclev10015403m.g' => 'ccl', 'Ciclev10015452m.g' => 'ccl', 'Ciclev10020068m.g' => 'ccl', 'CiPaw.01G125600' => 'cil', 'CiPaw.02G068600' => 'cil', 'CiPaw.03G151700' => 'cil', 'CiPaw.03G282500' => 'cil', 'CiPaw.10G082300' => 'cil', 'CiPaw.10G082500' => 'cil', 'ClCG01G011180' => 'cla', 'ClCG02G002930' => 'cla', 'ClCG05G003550' => 'cla', 'ClCG06G007630' => 'cla', 'ClCG07G001780' => 'cla', 'ClCG08G008970' => 'cla', 'COL.COLO4_00215' => 'col', 'COL.COLO4_01154' => 'col', 'COL.COLO4_20312' => 'col', 'COL.COLO4_31943' => 'col', 'COL.COLO4_37470' => 'col', 'Cpa.g.sc211.35' => 'cpa', 'Cpa.g.sc27.223' => 'cpa', 'Cpa.g.sc59.98' => 'cpa', 'Cpa.g.sc8.178' => 'cpa', 'Cre02.g146050' => 'cre', 'Cre17.g723650' => 'cre', 'CsaV3_1G015480' => 'csa', 'CsaV3_2G011380' => 'csa', 'CsaV3_3G011240' => 'csa', 'CsaV3_3G028760' => 'csa', 'CsaV3_7G002460' => 'csa', 'CSS0000979' => 'camsi', 'CSS0014510' => 'camsi', 'CSS0016545' => 'camsi', 'CSS0022458' => 'camsi', 'CSS0029887' => 'camsi', 'CSS0031828' => 'camsi', 'CSS0031965' => 'camsi', 'CSS0038044' => 'camsi', 'CSS0038360' => 'camsi', 'CSS0040134' => 'camsi', 'CSS0042697' => 'camsi', 'DCAR_001515' => 'dca', 'DCAR_004712' => 'dca', 'DCAR_006315' => 'dca', 'DCAR_008931' => 'dca', 'DCAR_010070' => 'dca', 'DCAR_019674' => 'dca', 'DCAR_021089' => 'dca', 'DCAR_024093' => 'dca', 'DCAR_027375' => 'dca', 'DCAR_027662' => 'dca', 'Dinv04671' => 'din', 'Dinv15334' => 'din', 'Dinv21307' => 'din', 'Dinv26596' => 'din', 'Dinv26597' => 'din', 'Dinv38270' => 'din', 'Duzib138G0702' => 'dzi', 'Duzib138G1175' => 'dzi', 'Duzib151G0020' => 'dzi', 'Duzib211G0275' => 'dzi', 'Duzib212G0162' => 'dzi', 'Duzib212G0965' => 'dzi', 'Duzib235G1548' => 'dzi', 'Duzib268G0506' => 'dzi', 'ECA150G0012' => 'eca', 'ECA233G2954' => 'eca', 'ECA233G5667' => 'eca', 'ECA234G1456' => 'eca', 'ECA234G4020' => 'eca', 'ECA234G4305' => 'eca', 'ECA236G1674' => 'eca', 'ECA236G4661' => 'eca', 'ECA248G3943' => 'eca', 'EL10Ac2g03512' => 'bvu', 'EL10Ac4g07552' => 'bvu', 'EL10Ac7g17597' => 'bvu', 'EL10Ac7g17794' => 'bvu', 'EL10Ac7g18093' => 'bvu', 'EL10Ac9g22667' => 'bvu', 'EL10As2g23161' => 'bvu', 'Eucgr.H00090' => 'egr', 'Eucgr.H00849' => 'egr', 'Eucgr.K03601' => 'egr', 'Eucgr.L00148' => 'egr', 'Eucgr.L01056' => 'egr', 'FAN02G3239' => 'fan', 'FAN05G3513' => 'fan', 'FAN08G2762' => 'fan', 'FAN09G4894' => 'fan', 'FAN12G1467' => 'fan', 'FAN13G1761' => 'fan', 'FAN14G0365' => 'fan', 'FAN15G1734' => 'fan', 'FAN16G2979' => 'fan', 'FAN17G0217' => 'fan', 'FAN17G0533' => 'fan', 'FAN17G0710' => 'fan', 'FAN17G1783' => 'fan', 'FAN17G3011' => 'fan', 'FAN17G3061' => 'fan', 'FAN18G3323' => 'fan', 'FAN20G1897' => 'fan', 'FAN21G2315' => 'fan', 'FAN22G1492' => 'fan', 'FAN24G0674' => 'fan', 'FAN25G3757' => 'fan', 'FAN26G1090' => 'fan', 'FAN27G0668' => 'fan', 'FAN27G1092' => 'fan', 'FAN27G1762' => 'fan', 'FvH4_2g19480' => 'fve', 'FvH4_2g19500' => 'fve', 'FvH4_3g00290' => 'fve', 'FvH4_4g00310' => 'fve', 'FvH4_6g40560' => 'fve', 'Glyma.02G308500' => 'gma', 'Glyma.07G180100' => 'gma', 'Glyma.07G268550' => 'gma', 'Glyma.10G124700' => 'gma', 'Glyma.14G004600' => 'gma', 'Glyma.17G005300' => 'gma', 'Glyma.20G009100' => 'gma', 'Glyma.20G077000' => 'gma', 'Gohir.A06G203600' => 'ghi', 'Gohir.A07G155500' => 'ghi', 'Gohir.A10G121400' => 'ghi', 'Gohir.A11G135901' => 'ghi', 'Gohir.A11G148500' => 'ghi', 'Gohir.D06G218000' => 'ghi', 'Gohir.D07G161900' => 'ghi', 'Gohir.D10G144700' => 'ghi', 'Gohir.D11G142300' => 'ghi', 'Gohir.D11G155300' => 'ghi', 'Gorai.001G185200' => 'gra', 'Gorai.007G152600' => 'gra', 'Gorai.007G165600' => 'gra', 'Gorai.010G248300' => 'gra', 'Gorai.011G161700' => 'gra', 'GSVIVG01007332001' => 'vvi', 'GSVIVG01028557001' => 'vvi', 'GSVIVG01029062001' => 'vvi', 'GSVIVG01030112001' => 'vvi', 'GSVIVG01037163001' => 'vvi', 'GSVIVG01037164001' => 'vvi', 'GSVIVG01037168001' => 'vvi', 'GSVIVG01037169001' => 'vvi', 'GSVIVG01037175001' => 'vvi', 'HanXRQChr01g0014711' => 'han', 'HanXRQChr02g0059581' => 'han', 'HanXRQChr03g0060191' => 'han', 'HanXRQChr11g0329391' => 'han', 'HanXRQChr15g0470221' => 'han', 'Haze_06339' => 'cav', 'Haze_07022' => 'cav', 'Haze_11568' => 'cav', 'Haze_12605' => 'cav', 'Haze_12616' => 'cav', 'Haze_24771' => 'cav', 'Haze_26110' => 'cav', 'Haze_26698' => 'cav', 'Haze_26840' => 'cav', 'Haze_27132' => 'cav', 'Haze_27477' => 'cav', 'Hma1.2p1_0048F.1_g027960' => 'hma', 'Hma1.2p1_0064F.1_g034730' => 'hma', 'Hma1.2p1_0253F.1_g102850' => 'hma', 'Hma1.2p1_0629F.1_g192260' => 'hma', 'Hma1.2p1_1499F.1_g287210' => 'hma', 'Hma1.2p1_2989F.1_g331310' => 'hma', 'HPP92_020591' => 'vpl', 'HPP92_020759' => 'vpl', 'HPP92_021835' => 'vpl', 'HPP92_025959' => 'vpl', 'Hund01545' => 'sun', 'Hund05523' => 'sun', 'Hund05656' => 'sun', 'Hund05657' => 'sun', 'Hund18546' => 'sun', 'Hund23102' => 'sun', 'Lalb_Chr01g0010781' => 'lal', 'Lalb_Chr03g0036641' => 'lal', 'Lalb_Chr07g0193991' => 'lal', 'Lalb_Chr12g0209631' => 'lal', 'Lalb_Chr13g0304381' => 'lal', 'Lalb_Chr17g0349291' => 'lal', 'Lalb_Chr19g0128831' => 'lal', 'Lj1A798G43' => 'lonja', 'Lj2A1134G25' => 'lonja', 'Lj2C256G13' => 'lonja', 'Lj3C581T3' => 'lonja', 'Lj3g0015738' => 'lja', 'Lj4g0009217' => 'lja', 'Lj6C613T0' => 'lonja', 'Lj6g0000018' => 'lja', 'Lj6g0008583' => 'lja', 'Lj8C136G9' => 'lonja', 'LjContig00081g0020819' => 'lja', 'Lsat_1_v5_gn_1_10281' => 'lsa', 'Lsat_1_v5_gn_5_122201' => 'lsa', 'Lsat_1_v5_gn_5_179700' => 'lsa', 'Lsat_1_v5_gn_6_63360' => 'lsa', 'Lsat_1_v5_gn_7_12880' => 'lsa', 'Lsat_1_v5_gn_7_96441' => 'lsa', 'Manes.03G150200' => 'mes', 'Manes.08G068601' => 'mes', 'Manes.12G042300' => 'mes', 'Manes.12G063500' => 'mes', 'Manes.13G061200' => 'mes', 'Mapoly0010s0153' => 'mpo', 'Mapoly0032s0155' => 'mpo', 'Mapoly0055s0037' => 'mpo', 'MBI05_g04452_MAGBIO' => 'mbi', 'MBI05_g04453_MAGBIO' => 'mbi', 'MBI05_g14663_MAGBIO' => 'mbi', 'MBI05_g16129_MAGBIO' => 'mbi', 'MBI07_g19565_MAGBIO' => 'mbi', 'MBI10_g03403_MAGBIO' => 'mbi', 'MBI10_g21118_MAGBIO' => 'mbi', 'MBI10_g27405_MAGBIO' => 'mbi', 'MBI10_g27406_MAGBIO' => 'mbi', 'MBI10_g27409_MAGBIO' => 'mbi', 'MBI11_g06896_MAGBIO' => 'mbi', 'MBI13_g16706_MAGBIO' => 'mbi', 'MBI14_g06714_MAGBIO' => 'mbi', 'MBI15_g32556_MAGBIO' => 'mbi', 'MBI16_g11665_MAGBIO' => 'mbi', 'MBI16_g19595_MAGBIO' => 'mbi', 'MBI16_g39577_MAGBIO' => 'mbi', 'MBI18_g19471_MAGBIO' => 'mbi', 'MBI18_g33167_MAGBIO' => 'mbi', 'MBI18_g46684_MAGBIO' => 'mbi', 'MCO11G884' => 'mco', 'MD04G1003800' => 'mdo', 'MD05G1179100' => 'mdo', 'MD06G1073900' => 'mdo', 'MD06G1074100' => 'mdo', 'MD09G1128400' => 'mdo', 'MD10G1167800' => 'mdo', 'MD10G1168400' => 'mdo', 'MD10G1339600' => 'mdo', 'MD15G1364500' => 'mdo', 'MD17G1117800' => 'mdo', 'Medtr0449s0040' => 'mtr', 'Medtr1g047210' => 'mtr', 'Medtr4g022430' => 'mtr', 'Medtr4g134090' => 'mtr', 'Medtr5g098310' => 'mtr', 'MELO3C006334.2' => 'cme', 'MELO3C011699.2' => 'cme', 'MELO3C018060.2' => 'cme', 'MELO3C020466.2' => 'cme', 'MELO3C024190.2' => 'cme', 'MELO3C026065.2' => 'cme', 'MELO3C026942.2' => 'cme', 'MELO3C032434.2' => 'cme', 'MELO3C032616.2' => 'cme', 'Migut.M00052' => 'egut', 'Migut.M01447' => 'egut', 'Migut.N00341' => 'egut', 'Migut.N02259' => 'egut', 'MSTRG.12251' => 'ama', 'MSTRG.17544' => 'ama', 'MSTRG.18379' => 'ama', 'MSTRG.21948' => 'ama', 'MSTRG.6633' => 'ama', 'MSTRG.7124' => 'ama', 'MSTRG.9833' => 'ama', 'Nitab4.5_0000006g0640' => 'nta', 'Nitab4.5_0000147g0420' => 'nta', 'Nitab4.5_0000846g0030' => 'nta', 'Nitab4.5_0001056g0040' => 'nta', 'Nitab4.5_0002920g0010' => 'nta', 'Nitab4.5_0003904g0050' => 'nta', 'Nitab4.5_0004499g0050' => 'nta', 'Nitab4.5_0006294g0100' => 'nta', 'Nitab4.5_0006992g0070' => 'nta', 'Nitab4.5_0009864g0040' => 'nta', 'Nn1g03141' => 'nnu', 'Nn1g07528' => 'nnu', 'Nn4g25581' => 'nnu', 'Oeu016706.1' => 'oeu', 'Oeu018505.1' => 'oeu', 'Oeu026857.1' => 'oeu', 'Oeu035795.1' => 'oeu', 'Oeu037218.2' => 'oeu', 'Oeu040455.1' => 'oeu', 'Oeu044436.2' => 'oeu', 'Oeu056864.2' => 'oeu', 'Oeu063488.1' => 'oeu', 'Os01g0110400' => 'osa', 'Os02g0817700' => 'osa', 'Os09g0252100' => 'osa', 'Os10g0457600' => 'osa', 'Peaxi162Scf00047g01234' => 'pax', 'Peaxi162Scf00052g00819' => 'pax', 'Peaxi162Scf00802g00025' => 'pax', 'Peaxi162Scf00811g00219' => 'pax', 'PGR004G0385' => 'pgr', 'PGR044G0189' => 'pgr', 'PGR044G1837' => 'pgr', 'PGR083G0570' => 'pgr', 'PGR142G3199' => 'pgr', 'PGSC0003DMG400010900' => 'stu', 'PGSC0003DMG400015808' => 'stu', 'PGSC0003DMG400019748' => 'stu', 'PGSC0003DMG400029618' => 'stu', 'PGSC0003DMG401017380' => 'stu', 'Phvul.003G011600' => 'pvu', 'Phvul.003G087600' => 'pvu', 'Phvul.007G236600' => 'pvu', 'Phvul.008G288400' => 'pvu', 'Potri.001G051800' => 'ptr', 'Potri.001G051900' => 'ptr', 'Potri.002G216400' => 'ptr', 'Potri.006G004400' => 'ptr', 'Potri.013G097500' => 'ptr', 'Potri.014G168700' => 'ptr', 'Pp3c10_19260' => 'ppa', 'Pp3c1_4530' => 'ppa', 'Pp3c3_31720' => 'ppa', 'Pp3c4_2260' => 'ppa', 'Pp3c6_4380' => 'ppa', 'Pp3c7_23680' => 'ppa', 'Pp3s30_770' => 'ppa', 'Pp3s34_290' => 'ppa', 'PRCOL_00000985' => 'pco', 'PRCOL_00006096' => 'pco', 'Prupe.1G003300' => 'ppe', 'Prupe.3G196800' => 'ppe', 'Prupe.4G003300' => 'ppe', 'Prupe.8G206400' => 'ppe', 'Psat0s3798g0120' => 'psa', 'Psat2g003160' => 'psa', 'Psat6g047680' => 'psa', 'Psat7g235200' => 'psa', 'PSO063G5466' => 'pso', 'PSO541G5735' => 'pso', 'PSO591G0205' => 'pso', 'PSO675G7256' => 'pso', 'PSO782G2530' => 'pso', 'PSO832G4276' => 'pso', 'QL04p067828' => 'qlo', 'QL05p067509' => 'qlo', 'QL06p023427' => 'qlo', 'QL09p044604' => 'qlo', 'RcHm_v2.0_Chr2g0155821' => 'rch', 'RcHm_v2.0_Chr4g0385141' => 'rch', 'RcHm_v2.0_Chr4g0415491' => 'rch', 'RcHm_v2.0_Chr5g0000431' => 'rch', 'RcHm_v2.0_Chr6g0275511' => 'rch', 'RcHm_v2.0_Chr6g0277641' => 'rch', 'RcHm_v2.0_Chr6g0277651' => 'rch', 'RcHm_v2.0_Chr6g0285181' => 'rch', 'RcHm_v2.0_Chr6g0286431' => 'rch', 'Rhsim02G0053400' => 'rsi', 'Rhsim04G0029500' => 'rsi', 'Rhsim04G0079000' => 'rsi', 'Rhsim05G0033300' => 'rsi', 'Rhsim06G0177400' => 'rsi', 'Rhsim10G0202300' => 'rsi', 'Rhsim11G0138800' => 'rsi', 'Rhsim13G0043400' => 'rsi', 'Rhsim13G0043800' => 'rsi', 'Rhsim13G0043900' => 'rsi', 'Rhsim13G0140200' => 'rsi', 'RhsimUnG0010400' => 'rsi', 'RhsimUnG0135600' => 'rsi', 'RhsimUnG0181100' => 'rsi', 'RhsimUnG0220900' => 'rsi', 'Sabra01G0036400' => 'sbr', 'Sabra01G0036500' => 'sbr', 'Sabra02G0168600' => 'sbr', 'Sabra03G0129200' => 'sbr', 'Sabra06G0003700' => 'sbr', 'SalBow2G0943' => 'sbo', 'SalBow2G3530' => 'sbo', 'SalBow3G1502' => 'sbo', 'SalBow7G0083' => 'sbo', 'SalBow8G0348' => 'sbo', 'SalBow8G3447' => 'sbo', 'Sc03g0011470' => 'sci', 'Sc13g0000020' => 'sci', 'Sc17g0002550' => 'sci', 'Sc21g0000590' => 'sci', 'Sc22g0000020' => 'sci', 'Sed0012821' => 'sed', 'Sed0014198' => 'sed', 'Sed0016191' => 'sed', 'Sed0022039' => 'sed', 'Sed0023508' => 'sed', 'Sed0024789' => 'sed', 'Sed0025338' => 'sed', 'Sed0027347' => 'sed', 'SEGI_04693' => 'sgi', 'SEGI_06665' => 'sgi', 'SEGI_14427' => 'sgi', 'SEGI_14828' => 'sgi', 'SEGI_16339' => 'sgi', 'SEGI_17114' => 'sgi', 'SEGI_21292' => 'sgi', 'SEGI_23334' => 'sgi', 'SEGI_28767' => 'sgi', 'SEGI_34142' => 'sgi', 'SEGI_37130' => 'sgi', 'SEGI_37733' => 'sgi', 'SGA_v2.0_scaffold181G39693' => 'sas', 'SGA_v2.0_scaffold186G40128' => 'sas', 'SGA_v2.0_scaffold211G42091' => 'sas', 'SGA_v2.0_scaffold211G42097' => 'sas', 'SGA_v2.0_scaffold42G16150' => 'sas', 'SGA_v2.0_scaffold48G17836' => 'sas', 'SGA_v2.0_scaffold4G02085' => 'sas', 'SGA_v2.0_scaffold54G19478' => 'sas', 'SGA_v2.0_scaffold73G24495' => 'sas', 'SHI00032' => 'shi', 'SHI00033' => 'shi', 'SHI00034' => 'shi', 'SMO118G0314' => 'smo', 'SMO143G0316' => 'smo', 'SMO265G0035' => 'smo', 'SMO348G0003' => 'smo', 'SMO358G0666' => 'smo', 'Solyc04g015100.3' => 'sly', 'Solyc05g017760.4' => 'sly', 'Solyc07g045350.4' => 'sly', 'Solyc09g061840.4' => 'sly', 'Solyc09g091470.3' => 'sly', 'Sopen04g007120' => 'spe', 'Sopen05g014220' => 'spe', 'Sopen06g008690' => 'spe', 'Sopen07g023890' => 'spe', 'Sopen09g024860' => 'spe', 'Sopen09g034400' => 'spe', 'Sp1g03560' => 'spa', 'Sp2g12420' => 'spa', 'Sp2g18600' => 'spa', 'Sp2g19270' => 'spa', 'Sp4g15450' => 'spa', 'TAR362G1326' => 'tar', 'TAR365G0672' => 'tar', 'TAR626G0548' => 'tar', 'TAR629G1314' => 'tar', 'TAR629G3135' => 'tar', 'TAR633G2194' => 'tar', 'TAR636G0834' => 'tar', 'THA.LOC104801047' => 'tha', 'THA.LOC104812791' => 'tha', 'THA.LOC104818944' => 'tha', 'THA.LOC104819035' => 'tha', 'THA.LOC104826110' => 'tha', 'Thecc.01G197200' => 'tca', 'Thecc.01G228900' => 'tca', 'Thecc.04G210500' => 'tca', 'Thecc.06G241500' => 'tca', 'Thhalv10000897m.g' => 'esa', 'Thhalv10004174m.g' => 'esa', 'Thhalv10004340m.g' => 'esa', 'Thhalv10016622m.g' => 'esa', 'TPR.G10095' => 'tpr', 'TPR.G15057' => 'tpr', 'TPR.G5630' => 'tpr', 'TPR.G5929' => 'tpr', 'TWI18G0291' => 'twi', 'TWI18G0918' => 'twi', 'TWI53G1368' => 'twi', 'TWI63G0063' => 'twi', 'TWI75G1502' => 'twi', 'unitig_32.g10867' => 'ugi', 'unitig_746.g26646' => 'ugi', 'unitig_748.g7909' => 'ugi', 'unitig_899.g15342' => 'ugi', 'vmacro00510' => 'vma', 'vmacro02745' => 'vma', 'vmacro03604' => 'vma', 'vmacro09479' => 'vma', 'vmacro12073' => 'vma', 'vmacro15505' => 'vma', 'VMungo0647G0519' => 'vmu', 'VMungo0720G3098' => 'vmu', 'VMungo1215G2469' => 'vmu', 'VMungo1215G2887' => 'vmu', 'Zm00001eb019210' => 'zma', 'Zm00001eb033060' => 'zma', 'Zm00001eb037560' => 'zma', 'Zm00001eb059590' => 'zma', 'Zm00001eb086470' => 'zma', 'Zm00001eb222320' => 'zma', 'Zm00001eb231150' => 'zma', 'Zm00001eb258950' => 'zma', 'Zm00001eb334430' => 'zma', 'Zm00001eb393330' => 'zma' ) $gf_id = 'HOM05D000879' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000879' ) $data_identifier = 'HOM05D000879' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 14, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 10, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 9, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 20, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 15, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393330' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1